Human

Human Kidney Gene DataBase

Name carbonic anhydrase IX
Symbol CA9
Aliases MN; carbonic dehydratase; RCC-associated protein G250
Gene Product
  • carbonic anhydrase IX precursor
Category
UniGene Hs.63287 
Reference Sequence
mRNA: NM_001216 Protein: NP_001207
OMIM and SNP
OMIM: 603179 SNP: NCBI SNP
Locus
LocusLink: 768Chromosome: 9Cytoband: 9p13-p12 UCSC Genome Map Eesembl Genome Map
SummaryCarbonic anhydrases (CAs) are a large family of zinc metalloenzymes that catalyze the reversible hydration of carbon dioxide. They participate in a variety of biological processes, including respiration, calcification, acid-base balance, bone resorption, and the formation of aqueous humor, cerebrospinal fluid, saliva, and gastric acid. They show extensive diversity in tissue distribution and in their subcellular localization. CA IX is a transmembrane protein and the only tumor-associated carbonic anhydrase isoenzyme known. It is expressed in all clear-cell renal cell carcinoma, but is not detected in normal kidney or most other normal tissues. It may be involved in cell proliferation and transformation. This gene was mapped to 17q21.2 by fluorescence in situ hybridization, however, radiation hybrid mapping localized it to 9p13-p12.
Gene Ontology
Expression
EST (77 ESTs, 44 libraries)
Tissue Breadth ? CPM ?
adiposeBreadth of expression: 1 out of  8 libraries express this gene (12.50%)Average CPM:1.60
boneBreadth of expression: 3 out of  24 libraries express this gene (12.50%)Average CPM:2.57
brainBreadth of expression: 4 out of  759 libraries express this gene (0.53%)Average CPM:1.00
cartilageBreadth of expression: 1 out of  16 libraries express this gene (6.25%)Average CPM:4.24
cervixBreadth of expression: 3 out of  11 libraries express this gene (27.27%)Average CPM:12.35
colonBreadth of expression: 6 out of  930 libraries express this gene (0.65%)Average CPM:14.63
kidneyBreadth of expression: 2 out of  145 libraries express this gene (1.38%)Average CPM:2.57
lungBreadth of expression: 2 out of  334 libraries express this gene (0.60%)Average CPM:6.65
nervousBreadth of expression: 1 out of  21 libraries express this gene (4.76%)Average CPM:2.89
ovaryBreadth of expression: 1 out of  170 libraries express this gene (0.59%)Average CPM:42.30
pancreasBreadth of expression: 1 out of  20 libraries express this gene (5.00%)Average CPM:0.60
placentaBreadth of expression: 2 out of  358 libraries express this gene (0.56%)Average CPM:1.02
stomachBreadth of expression: 5 out of  310 libraries express this gene (1.61%)Average CPM:1.46
testisBreadth of expression: 2 out of  180 libraries express this gene (1.11%)Average CPM:0.68
thyroidBreadth of expression: 1 out of  48 libraries express this gene (2.08%)Average CPM:68.71
uncharacterized tissueBreadth of expression: 6 out of  1739 libraries express this gene (0.35%)Average CPM:0.44
uterusBreadth of expression: 3 out of  236 libraries express this gene (1.27%)Average CPM:0.62
SAGE (748731 tags, 14 libraries)
Tissue Breadth ? CPM ?
brainBreadth of expression: 4 out of  30 libraries express this gene (13.33%)Average CPM:54.46
colonBreadth of expression: 2 out of  8 libraries express this gene (25.00%)Average CPM:18.75
eyeBreadth of expression: 1 out of  6 libraries express this gene (16.67%)Average CPM:9.50
mammary glandBreadth of expression: 1 out of  20 libraries express this gene (5.00%)Average CPM:16.38
ovaryBreadth of expression: 1 out of  10 libraries express this gene (10.00%)Average CPM:29.70
pancreasBreadth of expression: 1 out of  8 libraries express this gene (12.50%)Average CPM:26.34
prostateBreadth of expression: 1 out of  14 libraries express this gene (7.14%)Average CPM:25.76
skinBreadth of expression: 1 out of  7 libraries express this gene (14.29%)Average CPM:86.48
stomachBreadth of expression: 1 out of  4 libraries express this gene (25.00%)Average CPM:14.20
uncharacterized tissueBreadth of expression: 1 out of  20 libraries express this gene (5.00%)Average CPM:19.24
EvidenceAmplification in Kidney Neoplasms Hypomethylation in Kidney Neoplasms

Other key publications related to this gene


© 2004, KGDB, All Rights Reserved.
Department of Urology
University of California, San Francisco